GitHub

Routes 10x Chromium FASTQs through QC, STARsolo cell counting, Scanpy QC filtering, and Leiden clustering — all locally, with open-source tools, via natural language in ...

ngs-scrna-plugin is a TARVIA-lab tool for guided, AI-assisted single-cell RNA-seq analysis. From raw 10x Chromium FASTQs to annotated UMAP clusters — ask Claude Code in plain English. "I have 10x v3 ...
IEEE

sigRGCN: A Robust Residual Graph Convolutional Network for scRNA-Seq Data Clustering

Abstract: Clustering is a crucial step in single-cell RNA sequencing (scRNA-seq) data analysis, facilitating the discovery of new cell types and the grouping of similar cells. Recently, graph ...
Ars Technica

Entire Claude Code CLI source code leaks thanks to exposed map file

The entire source code for Anthropic’s Claude Code command line interface application (not the models themselves) has been leaked and disseminated, apparently due ...
IEEE

SEAL: Semantic-Aware Contrastive Learning for scRNA-seq clustering

Abstract: The development of single-cell RNA sequencing (scRNA-seq) technology has enabled the exploration of biological processes at the cellular level. A critical task in scRNA-seq data analysis is ...
Visual Studio Magazine

Hands On with New Multi-Agent Orchestration in VS Code

Multi-agent orchestration makes workflow more inspectable, with clear handoffs and a QA backstop. Breaking the work into discrete steps makes the output easier to audit and fix. A timestamped handoff ...
The New York Times

This A.I. Tool Is Going Viral. Five Ways People Are Using It.

Claude Code generates computer code when people type prompts, so those with no coding experience can create their own programs and apps. By Natallie Rocha Reporting from San Francisco Claude Code, an ...
InfoWorld

PythoC: A new way to generate C code from Python

PythoC lets you use Python as a C code generator, but with more features and flexibility than Cython provides. Here’s a first look at the new C code generator for Python. Python and C share more than ...
Visual Studio Magazine

Dedicated Python Environments Tool Rolls Out in VS Code Update

The Python team at Microsoft is continuing its overhaul of environment management in Visual Studio Code, with the August 2025 release advancing the controlled rollout of the new Python Environments ...
HealthTech

Perturb-Seq in Practice: Dissecting Gene Function with CRISPR + scRNA-Seq

In modern functional genomics, understanding how specific genes control cellular behavior requires both targeted intervention and high-resolution analysis. That’s where Perturb-Seq comes in—a method ...